PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_42080g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 645aa    MW: 71483.8 Da    PI: 6.4223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_42080g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07453500455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i  ++  L++l+P +    +k    a +L + ++Y++sLq
  MA_42080g0010 453 SHSLAERVRREKISARMKYLQDLVPGC----NKVTGRAVMLDEIINYVQSLQ 500
                    8*************************9....66799***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-8447504No hitNo description
SuperFamilySSF474591.57E-15447516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15449515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.672449499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4453500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8455505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEWGRLAHPH LPAPIAITIR MRADWAVSQT EHRQAKALQL VFGVRRCCCS DLLGYYVPES  60
LTETQFGYLI QRGFTDGSHS TQHLLYSLQQ PQEQQSEVTL LPDNPNNMNA MDMCMLDRQR  120
KGPNAQQQLN WPQQQQFLRT NYNSEQMHGP FTSLLTSSEM FSDGIITSEW QQLAEQNGHL  180
VTANPEYTMN IGRPMSSQGS ALRQTLSRSM SSPNGPLNLH TDWSNLSNNT ESMCTVESEA  240
NGRSAIKAPA CLGPFPSDPA FAQRAAKFSS LNGKSWNGRL STSQRASDGE AETGSLEFLS  300
DVARNEPQVA CSDDSESKKA FCRTTSCPPT VEHAAAETEK SSVVVEESAV SEKSSARDAK  360
TSNNNAVKKR KSGRTSAQNH RAADSEESKE KRSKTVHPDT EEKELVMAKT EQSNSDNSVD  420
SSPKPARANP KPLENQKQDY IHVRARRGQA TDSHSLAERV RREKISARMK YLQDLVPGCN  480
KVTGRAVMLD EIINYVQSLQ RQVEFLSMKL AAVNPSLEFN IDNFFAREMM MPVPPPGNFS  540
SLEGMSPNLA PYIHFQQMLQ QQASLQAGAC SGLDVPTLDT TPSLHRPGSA EMFGDAANFQ  600
GHAPSTWDSE LQNVFSMGLV QDRQPPFSSE GLPGHLEPNH MKMEM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1047280.0BT104728.1 Picea glauca clone GQ02814_B12 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.28e-52cryptochrome-interacting basic-helix-loop-helix 5